Only enable clip distance if written to on shader (#2217)

* Only enable clip distance if written to on shader

* Signal InstanceId use through FeatureFlags

* Shader cache version bump

Ryujinx.Graphics.Shader/Translation/FeatureFlags.cs

@@ -12,9 +12,11 @@ namespace Ryujinx.Graphics.Shader.Translation
         None = 0,
 
         // Affected by resolution scaling.
-        FragCoordXY     = 1 << 1,
         IntegerSampling = 1 << 0,
+        FragCoordXY     = 1 << 1,
 
-        Bindless        = 1 << 2,
+        Bindless = 1 << 2,
+
+        InstanceId = 1 << 3
     }
 }